Index

_

__init__() (neural_data_simulator.core.encoder.Encoder method) (neural_data_simulator.core.encoder.Processor method) (neural_data_simulator.core.ephys_generator.ContinuousData method) (neural_data_simulator.core.ephys_generator.ContinuousData.Params method) (neural_data_simulator.core.ephys_generator.LSLSpikeRateInputAdapter method) (neural_data_simulator.core.ephys_generator.NoiseData method) (neural_data_simulator.core.ephys_generator.ProcessOutput method) (neural_data_simulator.core.ephys_generator.ProcessOutput.LSLOutputs method) (neural_data_simulator.core.ephys_generator.ProcessOutput.Params method) (neural_data_simulator.core.ephys_generator.SpikeEvents method) (neural_data_simulator.core.ephys_generator.SpikeRateInput method) (neural_data_simulator.core.ephys_generator.SpikeRateTestingInput method) (neural_data_simulator.core.ephys_generator.Spikes method) (neural_data_simulator.core.ephys_generator.SpikeTimes method) (neural_data_simulator.core.ephys_generator.SpikeTimes.Params method) (neural_data_simulator.core.ephys_generator.Waveforms method) (neural_data_simulator.core.ephys_generator.Waveforms.Params method) (neural_data_simulator.core.filters.BandpassFilter method) (neural_data_simulator.core.filters.ButterworthFilter method) (neural_data_simulator.core.filters.GaussianFilter method) (neural_data_simulator.core.filters.HighpassFilter method) (neural_data_simulator.core.filters.LowpassFilter method) (neural_data_simulator.core.filters.RealTimeFilter method) (neural_data_simulator.core.health_checker.HealthChecker method) (neural_data_simulator.core.inputs.LSLInput method) (neural_data_simulator.core.inputs.SamplesInput method) (neural_data_simulator.core.inputs.StreamInfo method) (neural_data_simulator.core.models.EncoderModel method) (neural_data_simulator.core.outputs.ConsoleOutput method) (neural_data_simulator.core.outputs.FileOutput method) (neural_data_simulator.core.outputs.LSLOutputDevice method) (neural_data_simulator.core.outputs.StreamConfig method) (neural_data_simulator.core.runner.Encoder method) (neural_data_simulator.core.runner.Timer method) (neural_data_simulator.core.samples.Samples method) (neural_data_simulator.core.timing.Timer method) (neural_data_simulator.decoder.decoders.Decoder method) (neural_data_simulator.decoder.decoders.DecoderModel method) (neural_data_simulator.decoder.decoders.PersistedFileDecoderModel method) (neural_data_simulator.recorder.recorders.LSLStreamRecorder method) (neural_data_simulator.streamer.run_streamer.StreamGroup method) (neural_data_simulator.streamer.streamers.LSLStreamer method) (neural_data_simulator.streamer.streamers.Stream method) (neural_data_simulator.tasks.center_out_reach.buttons.Button method) (neural_data_simulator.tasks.center_out_reach.input_events.InputHandler method) (neural_data_simulator.tasks.center_out_reach.joystick.JoystickInput method) (neural_data_simulator.tasks.center_out_reach.metrics.MetricsCollector method) (neural_data_simulator.tasks.center_out_reach.scalers.PixelsToMetersConverter method) (neural_data_simulator.tasks.center_out_reach.scalers.StandardVelocityScaler method) (neural_data_simulator.tasks.center_out_reach.sprites.Sprite method) (neural_data_simulator.tasks.center_out_reach.task_runner.TaskRunner method) (neural_data_simulator.tasks.center_out_reach.task_runner.VelocityScaler method) (neural_data_simulator.tasks.center_out_reach.task_state.BaseState method) (neural_data_simulator.tasks.center_out_reach.task_state.State method) (neural_data_simulator.tasks.center_out_reach.task_state.StateMachine method) (neural_data_simulator.tasks.center_out_reach.task_state.StateParams method) (neural_data_simulator.tasks.center_out_reach.task_state.TaskState method) (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params method)

A

acquisition (neural_data_simulator.core.outputs.StreamConfig attribute) actual_cursor (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window.Colors attribute)

actual_cursor_color (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) advance() (neural_data_simulator.tasks.center_out_reach.task_state.TaskState method)

B

background (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window.Colors attribute) background_color (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) BandpassFilter (class in neural_data_simulator.core.filters) BaseState (class in neural_data_simulator.tasks.center_out_reach.task_state) beta (neural_data_simulator.core.settings.EphysGeneratorSettings.Noise attribute) blackrock (neural_data_simulator.streamer.settings.Streamer attribute) Blackrock (neural_data_simulator.streamer.settings.StreamerInputType attribute)

ButterworthFilter (class in neural_data_simulator.core.filters) Button (class in neural_data_simulator.tasks.center_out_reach.buttons) button_color (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) button_color_on_hover (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) button_offset_top (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) button_size (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) button_spacing (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute)

C

center_target() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) CenterOutReach (class in neural_data_simulator.tasks.center_out_reach.settings) CenterOutReach.Input (class in neural_data_simulator.tasks.center_out_reach.settings) CenterOutReach.Output (class in neural_data_simulator.tasks.center_out_reach.settings) CenterOutReach.StandardScaler (class in neural_data_simulator.tasks.center_out_reach.settings) CenterOutReach.Task (class in neural_data_simulator.tasks.center_out_reach.settings) CenterOutReach.Window (class in neural_data_simulator.tasks.center_out_reach.settings) CenterOutReach.Window.Colors (class in neural_data_simulator.tasks.center_out_reach.settings) change_color() (neural_data_simulator.tasks.center_out_reach.buttons.Button method) (neural_data_simulator.tasks.center_out_reach.sprites.Sprite method) channel_count (neural_data_simulator.core.ephys_generator.LSLSpikeRateInputAdapter property) (neural_data_simulator.core.ephys_generator.SpikeRateInput property) (neural_data_simulator.core.ephys_generator.SpikeRateTestingInput property) (neural_data_simulator.core.inputs.StreamInfo attribute) (neural_data_simulator.core.outputs.ConsoleOutput property) (neural_data_simulator.core.outputs.FileOutput property) (neural_data_simulator.core.outputs.LSLOutputDevice property) (neural_data_simulator.core.outputs.Output property) channel_format (neural_data_simulator.core.outputs.StreamConfig attribute) (neural_data_simulator.core.settings.LSLOutputModel attribute) (neural_data_simulator.streamer.settings.LSLSimplifiedOutputModel attribute) channel_labels (neural_data_simulator.core.outputs.StreamConfig attribute) (neural_data_simulator.core.settings.LSLOutputModel attribute)

clear_data() (neural_data_simulator.tasks.center_out_reach.metrics.MetricsCollector method) CLEAR_METRICS (neural_data_simulator.tasks.center_out_reach.input_events.InputEvent attribute) collect_sample() (neural_data_simulator.recorder.recorders.LSLStreamRecorder method) collides_with() (neural_data_simulator.tasks.center_out_reach.sprites.Sprite method) colors (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window attribute) connect() (neural_data_simulator.core.encoder.Encoder method) (neural_data_simulator.core.ephys_generator.LSLSpikeRateInputAdapter method) (neural_data_simulator.core.inputs.Input method) (neural_data_simulator.core.inputs.LSLInput method) (neural_data_simulator.core.inputs.SamplesInput method) (neural_data_simulator.core.outputs.ConsoleOutput method) (neural_data_simulator.core.outputs.FileOutput method) (neural_data_simulator.core.outputs.LSLOutputDevice method) (neural_data_simulator.core.outputs.Output method) (neural_data_simulator.core.runner.Encoder method) (neural_data_simulator.streamer.run_streamer.StreamGroup method) connection_timeout (neural_data_simulator.core.settings.LSLInputModel attribute) ConsoleOutput (class in neural_data_simulator.core.outputs) ContinuousData (class in neural_data_simulator.core.ephys_generator) ContinuousData.Params (class in neural_data_simulator.core.ephys_generator) cursor_radius (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute)

D

data (neural_data_simulator.core.samples.Samples attribute) data_array_name (neural_data_simulator.core.settings.EncoderSettings.Input.File attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ.Input attribute) data_frequency (neural_data_simulator.core.settings.EphysGeneratorSettings.Output.LFP attribute) decode() (neural_data_simulator.decoder.decoders.Decoder method) decoded_cursor (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window.Colors attribute) decoded_cursor_color (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) decoded_cursor_on_target (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window.Colors attribute) decoded_cursor_on_target_color (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) Decoder (class in neural_data_simulator.decoder.decoders) DecoderModel (class in neural_data_simulator.decoder.decoders) DecoderSettings (class in neural_data_simulator.decoder.settings)

DecoderSettings.Input (class in neural_data_simulator.decoder.settings) DecoderSettings.Output (class in neural_data_simulator.decoder.settings) delay_to_begin (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_state.StateParams attribute) delay_waiting_for_cue (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_state.StateParams attribute) disconnect() (neural_data_simulator.core.inputs.Input method) (neural_data_simulator.core.inputs.LSLInput method) (neural_data_simulator.core.outputs.FileOutput method) (neural_data_simulator.core.outputs.LSLOutputDevice method) (neural_data_simulator.core.outputs.Output method) (neural_data_simulator.streamer.run_streamer.StreamGroup method) draw() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method)

E

empty (neural_data_simulator.core.samples.Samples property) empty_samples() (neural_data_simulator.core.samples.Samples class method) enabled (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Input attribute) encode() (neural_data_simulator.core.models.EncoderModel method) Encoder (class in neural_data_simulator.core.encoder) (class in neural_data_simulator.core.runner) encoder (neural_data_simulator.core.settings.Settings attribute) EncoderEndpointType (class in neural_data_simulator.core.settings) EncoderModel (class in neural_data_simulator.core.models) EncoderModelType (class in neural_data_simulator.core.settings) EncoderSettings (class in neural_data_simulator.core.settings) EncoderSettings.Input (class in neural_data_simulator.core.settings) EncoderSettings.Input.File (class in neural_data_simulator.core.settings) EncoderSettings.Output (class in neural_data_simulator.core.settings) enter() (neural_data_simulator.tasks.center_out_reach.task_state.BaseState method) (neural_data_simulator.tasks.center_out_reach.task_state.InTarget method) (neural_data_simulator.tasks.center_out_reach.task_state.Reaching method) (neural_data_simulator.tasks.center_out_reach.task_state.State method) (neural_data_simulator.tasks.center_out_reach.task_state.StateMachine method) (neural_data_simulator.tasks.center_out_reach.task_state.WaitingForCue method) ephys_generator (neural_data_simulator.core.settings.Settings attribute)

EphysGeneratorEndpointType (class in neural_data_simulator.core.settings) EphysGeneratorSettings (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Input (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Input.Testing (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Noise (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Output (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Output.LFP (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Output.Raw (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Output.SpikeEvents (class in neural_data_simulator.core.settings) EphysGeneratorSettings.Waveforms (class in neural_data_simulator.core.settings) execute() (neural_data_simulator.core.encoder.Processor method) (neural_data_simulator.core.filters.ButterworthFilter method) (neural_data_simulator.core.filters.GaussianFilter method) (neural_data_simulator.core.filters.RealTimeFilter method) EXIT (neural_data_simulator.tasks.center_out_reach.input_events.InputEvent attribute) exit() (neural_data_simulator.tasks.center_out_reach.task_state.BaseState method) (neural_data_simulator.tasks.center_out_reach.task_state.InTarget method) (neural_data_simulator.tasks.center_out_reach.task_state.Reaching method) (neural_data_simulator.tasks.center_out_reach.task_state.State method) (neural_data_simulator.tasks.center_out_reach.task_state.WaitingForCue method) extra (neural_data_simulator.core.settings.Settings.Config attribute)

F

FILE (neural_data_simulator.core.settings.EncoderEndpointType attribute) file (neural_data_simulator.core.settings.EncoderSettings.Input attribute) (neural_data_simulator.core.settings.EncoderSettings.Output attribute) (neural_data_simulator.streamer.settings.Streamer.Blackrock.Input attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ.Input attribute) FileOutput (class in neural_data_simulator.core.outputs)

filter_cutoff (neural_data_simulator.core.settings.EphysGeneratorSettings.Output.LFP attribute) filter_order (neural_data_simulator.core.settings.EphysGeneratorSettings.Output.LFP attribute) fmin (neural_data_simulator.core.settings.EphysGeneratorSettings.Noise attribute) font_size (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) from_lsl_settings() (neural_data_simulator.core.outputs.LSLOutputDevice class method) (neural_data_simulator.core.outputs.StreamConfig class method)

G

GaussianFilter (class in neural_data_simulator.core.filters) generate_spikes() (neural_data_simulator.core.ephys_generator.Spikes method) (neural_data_simulator.core.ephys_generator.SpikeTimes method) get_continuous_data() (neural_data_simulator.core.ephys_generator.ContinuousData method) get_cursor_relative_position() (neural_data_simulator.tasks.center_out_reach.input_events.InputHandler method) get_info() (neural_data_simulator.core.inputs.LSLInput method) get_lfp_data() (neural_data_simulator.core.ephys_generator.ContinuousData method)

get_monitors() (in module neural_data_simulator.tasks.center_out_reach.screen_info) get_next_state() (neural_data_simulator.tasks.center_out_reach.task_state.StateMachine method) get_ppmm() (in module neural_data_simulator.tasks.center_out_reach.screen_info) get_slice() (neural_data_simulator.core.ephys_generator.NoiseData method) get_spike_event() (neural_data_simulator.core.ephys_generator.SpikeEvents method) get_spike_waveforms() (neural_data_simulator.core.ephys_generator.Waveforms method) get_timer() (in module neural_data_simulator.core.timing)

H

has_consumers() (neural_data_simulator.core.outputs.LSLOutputDevice method) (neural_data_simulator.core.outputs.Output method)

HealthChecker (class in neural_data_simulator.core.health_checker) height (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window attribute) HighpassFilter (class in neural_data_simulator.core.filters)

I

Input (class in neural_data_simulator.core.inputs) input (neural_data_simulator.core.settings.EncoderSettings attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) (neural_data_simulator.decoder.settings.DecoderSettings attribute) (neural_data_simulator.streamer.settings.Streamer.Blackrock attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ attribute) (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute) input_device_name (neural_data_simulator.tasks.center_out_reach.input_events.InputHandler property) input_type (neural_data_simulator.streamer.settings.Streamer attribute) InputEvent (class in neural_data_simulator.tasks.center_out_reach.input_events) InputHandler (class in neural_data_simulator.tasks.center_out_reach.input_events) instrument (neural_data_simulator.core.settings.LSLOutputModel attribute) (neural_data_simulator.streamer.settings.LSLSimplifiedOutputModel attribute) InTarget (class in neural_data_simulator.tasks.center_out_reach.task_state) InvalidPluginError

inverse_transform() (neural_data_simulator.tasks.center_out_reach.scalers.StandardVelocityScaler method) (neural_data_simulator.tasks.center_out_reach.task_runner.VelocityScaler method) is_cursor_on_target (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow property) is_finished (neural_data_simulator.streamer.streamers.Stream attribute) is_mouse_over (neural_data_simulator.tasks.center_out_reach.buttons.Button property) is_target_centered (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow property) is_valid_next_state() (neural_data_simulator.tasks.center_out_reach.task_state.BaseState method) (neural_data_simulator.tasks.center_out_reach.task_state.InTarget method) (neural_data_simulator.tasks.center_out_reach.task_state.MenuScreen method) (neural_data_simulator.tasks.center_out_reach.task_state.Reaching method) (neural_data_simulator.tasks.center_out_reach.task_state.State method) (neural_data_simulator.tasks.center_out_reach.task_state.WaitingForCue method) (neural_data_simulator.tasks.center_out_reach.task_state.WaitingToBegin method) iterate() (neural_data_simulator.core.encoder.Encoder method) (neural_data_simulator.core.runner.Encoder method)

J

JoystickInput (class in neural_data_simulator.tasks.center_out_reach.joystick)

L

leave() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) length (neural_data_simulator.streamer.streamers.Stream property) lfp (neural_data_simulator.core.ephys_generator.ProcessOutput.LSLOutputs attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Output attribute) lfp_data_frequency (neural_data_simulator.core.ephys_generator.ContinuousData.Params attribute) lfp_downsample_rate (neural_data_simulator.core.ephys_generator.ContinuousData.Params property) lfp_filter_cutoff (neural_data_simulator.core.ephys_generator.ContinuousData.Params attribute) lfp_filter_order (neural_data_simulator.core.ephys_generator.ContinuousData.Params attribute) load_blackrock_file() (in module neural_data_simulator.streamer.run_streamer) load_from_npz() (neural_data_simulator.core.samples.Samples class method) log_level (neural_data_simulator.core.settings.Settings attribute) LogLevel (class in neural_data_simulator.core.settings) loop_time (neural_data_simulator.core.settings.TimerModel attribute) LowpassFilter (class in neural_data_simulator.core.filters) LSL (neural_data_simulator.core.settings.EncoderEndpointType attribute) lsl (neural_data_simulator.core.settings.EncoderSettings.Input attribute) (neural_data_simulator.core.settings.EncoderSettings.Output attribute) LSL (neural_data_simulator.core.settings.EphysGeneratorEndpointType attribute) lsl (neural_data_simulator.core.settings.EphysGeneratorSettings.Input attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Output.LFP attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Output.Raw attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Output.SpikeEvents attribute) (neural_data_simulator.decoder.settings.DecoderSettings.Input attribute) (neural_data_simulator.decoder.settings.DecoderSettings.Output attribute) (neural_data_simulator.streamer.settings.Streamer.Blackrock.Output attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ.Output attribute) (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Input attribute) (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Output attribute)

lsl_chunk_frequency (neural_data_simulator.core.ephys_generator.ProcessOutput.Params attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) (neural_data_simulator.streamer.settings.Streamer attribute) lsl_chunk_interval (neural_data_simulator.core.ephys_generator.ProcessOutput.Params property) lsl_stream_info (neural_data_simulator.core.inputs.StreamInfo attribute) LSLChannelFormatType (class in neural_data_simulator.core.settings) LSLInput (class in neural_data_simulator.core.inputs) LSLInputModel (class in neural_data_simulator.core.settings) LSLOutputDevice (class in neural_data_simulator.core.outputs) LSLOutputModel (class in neural_data_simulator.core.settings) LSLSimplifiedOutputModel (class in neural_data_simulator.streamer.settings) LSLSpikeRateInputAdapter (class in neural_data_simulator.core.ephys_generator) LSLStreamer (class in neural_data_simulator.streamer.streamers) LSLStreamRecorder (class in neural_data_simulator.recorder.recorders)

M

max_cpu_buffer (neural_data_simulator.core.settings.TimerModel attribute) max_trial_time (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_state.StateParams attribute) mean (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.StandardScaler attribute) MenuScreen (class in neural_data_simulator.tasks.center_out_reach.task_state) meters_to_pixels() (neural_data_simulator.tasks.center_out_reach.scalers.PixelsToMetersConverter method) MetricsCollector (class in neural_data_simulator.tasks.center_out_reach.metrics) millimeters_to_pixels() (neural_data_simulator.tasks.center_out_reach.scalers.PixelsToMetersConverter method) model (neural_data_simulator.core.settings.EncoderSettings attribute) model_file (neural_data_simulator.decoder.settings.DecoderSettings attribute) model_weights_file (neural_data_simulator.core.settings.EncoderSettings attribute) module neural_data_simulator neural_data_simulator.core neural_data_simulator.core.encoder neural_data_simulator.core.ephys_generator neural_data_simulator.core.filters neural_data_simulator.core.health_checker neural_data_simulator.core.inputs neural_data_simulator.core.models neural_data_simulator.core.outputs neural_data_simulator.core.runner neural_data_simulator.core.samples neural_data_simulator.core.settings neural_data_simulator.core.timing neural_data_simulator.decoder neural_data_simulator.decoder.decoders neural_data_simulator.decoder.run_decoder neural_data_simulator.decoder.settings neural_data_simulator.plugins neural_data_simulator.recorder neural_data_simulator.recorder.recorders neural_data_simulator.recorder.run_recorder neural_data_simulator.scripts neural_data_simulator.scripts.errors neural_data_simulator.scripts.post_install_config neural_data_simulator.scripts.run_encoder neural_data_simulator.scripts.run_ephys_generator neural_data_simulator.streamer neural_data_simulator.streamer.run_streamer neural_data_simulator.streamer.settings neural_data_simulator.streamer.streamers neural_data_simulator.tasks neural_data_simulator.tasks.center_out_reach neural_data_simulator.tasks.center_out_reach.buttons neural_data_simulator.tasks.center_out_reach.input_events neural_data_simulator.tasks.center_out_reach.joystick neural_data_simulator.tasks.center_out_reach.metrics neural_data_simulator.tasks.center_out_reach.scalers neural_data_simulator.tasks.center_out_reach.screen_info neural_data_simulator.tasks.center_out_reach.settings neural_data_simulator.tasks.center_out_reach.sprites neural_data_simulator.tasks.center_out_reach.task_runner neural_data_simulator.tasks.center_out_reach.task_state neural_data_simulator.tasks.center_out_reach.task_window neural_data_simulator.tasks.run_center_out_reach neural_data_simulator.tasks.run_closed_loop

MOUSE_BUTTON_PRESSED (neural_data_simulator.tasks.center_out_reach.input_events.InputEvent attribute)

N

n_channels (neural_data_simulator.core.settings.EncoderSettings.Output attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Input.Testing attribute) (neural_data_simulator.decoder.settings.DecoderSettings.Output attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ.Output attribute) n_refractory_samples (neural_data_simulator.core.ephys_generator.SpikeTimes.Params property) n_samples (neural_data_simulator.core.ephys_generator.Waveforms.Params attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Waveforms attribute) n_samples_waveform (neural_data_simulator.core.ephys_generator.ContinuousData.Params attribute) n_units_per_channel (neural_data_simulator.core.ephys_generator.ContinuousData.Params attribute) (neural_data_simulator.core.ephys_generator.ProcessOutput.Params attribute) (neural_data_simulator.core.ephys_generator.Spikes.Params attribute) (neural_data_simulator.core.ephys_generator.SpikeTimes.Params attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) name (neural_data_simulator.core.inputs.StreamInfo attribute) (neural_data_simulator.core.outputs.LSLOutputDevice property) (neural_data_simulator.core.outputs.StreamConfig attribute) neural_data_simulator module neural_data_simulator.core module neural_data_simulator.core.encoder module neural_data_simulator.core.ephys_generator module neural_data_simulator.core.filters module neural_data_simulator.core.health_checker module neural_data_simulator.core.inputs module neural_data_simulator.core.models module neural_data_simulator.core.outputs module neural_data_simulator.core.runner module neural_data_simulator.core.samples module neural_data_simulator.core.settings module neural_data_simulator.core.timing module neural_data_simulator.decoder module neural_data_simulator.decoder.decoders module neural_data_simulator.decoder.run_decoder module neural_data_simulator.decoder.settings module neural_data_simulator.plugins module neural_data_simulator.recorder module neural_data_simulator.recorder.recorders module

neural_data_simulator.recorder.run_recorder module neural_data_simulator.scripts module neural_data_simulator.scripts.errors module neural_data_simulator.scripts.post_install_config module neural_data_simulator.scripts.run_encoder module neural_data_simulator.scripts.run_ephys_generator module neural_data_simulator.streamer module neural_data_simulator.streamer.run_streamer module neural_data_simulator.streamer.settings module neural_data_simulator.streamer.streamers module neural_data_simulator.tasks module neural_data_simulator.tasks.center_out_reach module neural_data_simulator.tasks.center_out_reach.buttons module neural_data_simulator.tasks.center_out_reach.input_events module neural_data_simulator.tasks.center_out_reach.joystick module neural_data_simulator.tasks.center_out_reach.metrics module neural_data_simulator.tasks.center_out_reach.scalers module neural_data_simulator.tasks.center_out_reach.screen_info module neural_data_simulator.tasks.center_out_reach.settings module neural_data_simulator.tasks.center_out_reach.sprites module neural_data_simulator.tasks.center_out_reach.task_runner module neural_data_simulator.tasks.center_out_reach.task_state module neural_data_simulator.tasks.center_out_reach.task_window module neural_data_simulator.tasks.run_center_out_reach module neural_data_simulator.tasks.run_closed_loop module noise (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) NoiseData (class in neural_data_simulator.core.ephys_generator) NONE (neural_data_simulator.tasks.center_out_reach.input_events.InputEvent attribute) npz (neural_data_simulator.streamer.settings.Streamer attribute) NPZ (neural_data_simulator.streamer.settings.StreamerInputType attribute) number_of_targets (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute)

O

open_connection() (neural_data_simulator.streamer.run_streamer.StreamGroup method) Output (class in neural_data_simulator.core.outputs) output (neural_data_simulator.core.settings.EncoderSettings attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) (neural_data_simulator.decoder.settings.DecoderSettings attribute) (neural_data_simulator.streamer.settings.Streamer.Blackrock attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ attribute) (neural_data_simulator.streamer.streamers.Stream attribute) (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute)

P

path (neural_data_simulator.core.settings.EncoderSettings.Input.File attribute) PersistedFileDecoderModel (class in neural_data_simulator.decoder.decoders) pixels_to_meters() (neural_data_simulator.tasks.center_out_reach.scalers.PixelsToMetersConverter method) pixels_to_millimeters() (neural_data_simulator.tasks.center_out_reach.scalers.PixelsToMetersConverter method) PixelsToMetersConverter (class in neural_data_simulator.tasks.center_out_reach.scalers) plot_metrics() (neural_data_simulator.tasks.center_out_reach.metrics.MetricsCollector method) PLUGIN (neural_data_simulator.core.settings.EncoderModelType attribute) poll() (neural_data_simulator.tasks.center_out_reach.input_events.InputHandler method) position (neural_data_simulator.tasks.center_out_reach.sprites.Sprite property) postprocessor (neural_data_simulator.core.settings.EncoderSettings attribute) ppi (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window attribute) predict() (neural_data_simulator.decoder.decoders.DecoderModel method) (neural_data_simulator.decoder.decoders.PersistedFileDecoderModel method)

preprocessor (neural_data_simulator.core.settings.EncoderSettings attribute) press() (neural_data_simulator.tasks.center_out_reach.buttons.Button method) process_event() (neural_data_simulator.tasks.center_out_reach.joystick.JoystickInput method) Processor (class in neural_data_simulator.core.encoder) ProcessOutput (class in neural_data_simulator.core.ephys_generator) ProcessOutput.LSLOutputs (class in neural_data_simulator.core.ephys_generator) ProcessOutput.Params (class in neural_data_simulator.core.ephys_generator) prototypes (neural_data_simulator.core.ephys_generator.Waveforms.Params property) (neural_data_simulator.core.settings.EphysGeneratorSettings.Waveforms attribute) prototypes_definitions (neural_data_simulator.core.ephys_generator.Waveforms.Params attribute) prototypes_ids (neural_data_simulator.core.ephys_generator.Waveforms.Params property)

R

radius_to_target (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) random_seed (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) randomize_target() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) raw (neural_data_simulator.core.ephys_generator.ProcessOutput.LSLOutputs attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Output attribute) raw_data_frequency (neural_data_simulator.core.ephys_generator.ContinuousData.Params attribute) (neural_data_simulator.core.ephys_generator.ProcessOutput.Params attribute) (neural_data_simulator.core.ephys_generator.Spikes.Params attribute) (neural_data_simulator.core.ephys_generator.SpikeTimes.Params attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) Reaching (class in neural_data_simulator.tasks.center_out_reach.task_state) read() (neural_data_simulator.core.ephys_generator.LSLSpikeRateInputAdapter method) (neural_data_simulator.core.ephys_generator.SpikeRateInput method) (neural_data_simulator.core.ephys_generator.SpikeRateTestingInput method) (neural_data_simulator.core.inputs.Input method) (neural_data_simulator.core.inputs.LSLInput method) (neural_data_simulator.core.inputs.SamplesInput method) read_cursor (neural_data_simulator.streamer.streamers.Stream attribute) RealTimeFilter (class in neural_data_simulator.core.filters) record_actual_velocities() (neural_data_simulator.tasks.center_out_reach.metrics.MetricsCollector method) record_cursor_positions() (neural_data_simulator.tasks.center_out_reach.metrics.MetricsCollector method)

record_decoded_velocities() (neural_data_simulator.tasks.center_out_reach.metrics.MetricsCollector method) record_processed_samples() (neural_data_simulator.core.health_checker.HealthChecker method) rect (neural_data_simulator.tasks.center_out_reach.task_window.RichText attribute) refractory_time (neural_data_simulator.core.ephys_generator.Spikes.Params attribute) (neural_data_simulator.core.ephys_generator.SpikeTimes.Params attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) relative_position (neural_data_simulator.tasks.center_out_reach.joystick.JoystickInput property) RESET (neural_data_simulator.tasks.center_out_reach.input_events.InputEvent attribute) reset_cursor() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) reset_target_color() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) resolution (neural_data_simulator.core.ephys_generator.ProcessOutput.Params attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) RichText (class in neural_data_simulator.tasks.center_out_reach.task_window) run() (in module neural_data_simulator.core.runner) (in module neural_data_simulator.decoder.run_decoder) (in module neural_data_simulator.recorder.run_recorder) (in module neural_data_simulator.scripts.post_install_config) (in module neural_data_simulator.scripts.run_encoder) (in module neural_data_simulator.scripts.run_ephys_generator) (in module neural_data_simulator.streamer.run_streamer) (in module neural_data_simulator.tasks.run_center_out_reach) (in module neural_data_simulator.tasks.run_closed_loop) (neural_data_simulator.tasks.center_out_reach.task_runner.TaskRunner method)

S

sample_rate (neural_data_simulator.core.inputs.StreamInfo attribute) (neural_data_simulator.core.outputs.LSLOutputDevice property) (neural_data_simulator.core.outputs.StreamConfig attribute) Samples (class in neural_data_simulator.core.samples) samples (neural_data_simulator.core.settings.EphysGeneratorSettings.Noise attribute) (neural_data_simulator.streamer.streamers.Stream attribute) SamplesInput (class in neural_data_simulator.core.inputs) sampling_rate (neural_data_simulator.core.settings.EncoderSettings.Input.File attribute) (neural_data_simulator.decoder.settings.DecoderSettings.Output attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ.Output attribute) (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute) save() (neural_data_simulator.recorder.recorders.LSLStreamRecorder method) scale (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.StandardScaler attribute) send() (neural_data_simulator.core.outputs.Output method) send_as_chunk() (neural_data_simulator.core.outputs.LSLOutputDevice method) send_as_sample() (neural_data_simulator.core.outputs.LSLOutputDevice method) set_connection_timeout() (neural_data_simulator.core.inputs.LSLInput method) set_decoded_cursor_on_target() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) set_handler_for_event() (neural_data_simulator.tasks.center_out_reach.input_events.InputHandler method) set_reference_time_to_now() (neural_data_simulator.core.inputs.SamplesInput method) set_target_ready() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) Settings (class in neural_data_simulator.core.settings) Settings.Config (class in neural_data_simulator.core.settings) show_hint() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) source_id (neural_data_simulator.core.outputs.StreamConfig attribute) (neural_data_simulator.core.settings.LSLOutputModel attribute) spike_events (neural_data_simulator.core.ephys_generator.ProcessOutput.LSLOutputs attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Output attribute) spike_threshold (neural_data_simulator.decoder.settings.DecoderSettings attribute) SpikeEvents (class in neural_data_simulator.core.ephys_generator) SpikeEvents.SpikeEvent (class in neural_data_simulator.core.ephys_generator) SpikeRateInput (class in neural_data_simulator.core.ephys_generator) SpikeRateTestingInput (class in neural_data_simulator.core.ephys_generator) Spikes (class in neural_data_simulator.core.ephys_generator)

Spikes.Params (class in neural_data_simulator.core.ephys_generator) SpikeTimes (class in neural_data_simulator.core.ephys_generator) SpikeTimes.Params (class in neural_data_simulator.core.ephys_generator) Sprite (class in neural_data_simulator.tasks.center_out_reach.sprites) standard_deviation (neural_data_simulator.core.settings.EphysGeneratorSettings.Noise attribute) standard_scaler (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute) StandardVelocityScaler (class in neural_data_simulator.tasks.center_out_reach.scalers) start() (neural_data_simulator.core.ephys_generator.ProcessOutput method) (neural_data_simulator.core.runner.Timer method) (neural_data_simulator.core.timing.Timer method) start_task() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) State (class in neural_data_simulator.tasks.center_out_reach.task_state) StateMachine (class in neural_data_simulator.tasks.center_out_reach.task_state) StateParams (class in neural_data_simulator.tasks.center_out_reach.task_state) stop() (neural_data_simulator.core.ephys_generator.ProcessOutput method) (neural_data_simulator.tasks.center_out_reach.task_runner.TaskRunner method) stop_task() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) Stream (class in neural_data_simulator.streamer.streamers) stream() (neural_data_simulator.streamer.streamers.LSLStreamer method) stream_indefinitely (neural_data_simulator.streamer.settings.Streamer attribute) stream_name (neural_data_simulator.core.settings.LSLInputModel attribute) (neural_data_simulator.core.settings.LSLOutputModel attribute) stream_type (neural_data_simulator.core.settings.LSLOutputModel attribute) StreamConfig (class in neural_data_simulator.core.outputs) Streamer (class in neural_data_simulator.streamer.settings) Streamer.Blackrock (class in neural_data_simulator.streamer.settings) Streamer.Blackrock.Input (class in neural_data_simulator.streamer.settings) Streamer.Blackrock.Output (class in neural_data_simulator.streamer.settings) Streamer.NPZ (class in neural_data_simulator.streamer.settings) Streamer.NPZ.Input (class in neural_data_simulator.streamer.settings) Streamer.NPZ.Output (class in neural_data_simulator.streamer.settings) StreamerInputType (class in neural_data_simulator.streamer.settings) StreamGroup (class in neural_data_simulator.streamer.run_streamer) StreamInfo (class in neural_data_simulator.core.inputs) surface (neural_data_simulator.tasks.center_out_reach.task_window.RichText attribute)

T

target (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window.Colors attribute) target_color (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) target_holding_time (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_state.StateParams attribute) target_radius (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Task attribute) (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) target_waiting_color (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow.Params attribute) target_waiting_for_cue (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window.Colors attribute) task (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute) task_window_output (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute) TaskRunner (class in neural_data_simulator.tasks.center_out_reach.task_runner) TaskState (class in neural_data_simulator.tasks.center_out_reach.task_state) TaskWindow (class in neural_data_simulator.tasks.center_out_reach.task_window) TaskWindow.Params (class in neural_data_simulator.tasks.center_out_reach.task_window) TESTING (neural_data_simulator.core.settings.EphysGeneratorEndpointType attribute) testing (neural_data_simulator.core.settings.EphysGeneratorSettings.Input attribute) tick() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) time_idx (neural_data_simulator.core.ephys_generator.SpikeEvents attribute) (neural_data_simulator.core.ephys_generator.SpikeEvents.SpikeEvent attribute)

time_in_state (neural_data_simulator.tasks.center_out_reach.task_state.BaseState property) Timer (class in neural_data_simulator.core.runner) (class in neural_data_simulator.core.timing) timer (neural_data_simulator.core.settings.Settings attribute) TimerModel (class in neural_data_simulator.core.settings) timestamps (neural_data_simulator.core.samples.Samples attribute) timestamps_array_name (neural_data_simulator.core.settings.EncoderSettings.Input.File attribute) (neural_data_simulator.streamer.settings.Streamer.NPZ.Input attribute) toggle_actual_cursor() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) TOGGLE_CURSOR (neural_data_simulator.tasks.center_out_reach.input_events.InputEvent attribute) total_elapsed_time() (neural_data_simulator.core.runner.Timer method) (neural_data_simulator.core.timing.Timer method) transform() (neural_data_simulator.tasks.center_out_reach.scalers.StandardVelocityScaler method) (neural_data_simulator.tasks.center_out_reach.task_runner.VelocityScaler method) trial_timed_out (neural_data_simulator.tasks.center_out_reach.task_state.BaseState property) try_press_button() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) type (neural_data_simulator.core.outputs.StreamConfig attribute) (neural_data_simulator.core.settings.EncoderSettings.Input attribute) (neural_data_simulator.core.settings.EncoderSettings.Output attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Input attribute)

U

unit (neural_data_simulator.core.ephys_generator.SpikeEvents attribute) (neural_data_simulator.core.ephys_generator.SpikeEvents.SpikeEvent attribute) unit_prototype_mapping (neural_data_simulator.core.ephys_generator.Waveforms.Params attribute) (neural_data_simulator.core.settings.EphysGeneratorSettings.Waveforms attribute)

update_cursor() (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow method) update_position() (neural_data_simulator.tasks.center_out_reach.sprites.Sprite method)

V

VELOCITY_TUNING_CURVES (neural_data_simulator.core.settings.EncoderModelType attribute)

VelocityScaler (class in neural_data_simulator.tasks.center_out_reach.task_runner)

W

wait() (neural_data_simulator.core.runner.Timer method) (neural_data_simulator.core.timing.Timer method) wait_for_consumers() (neural_data_simulator.core.outputs.LSLOutputDevice method) (neural_data_simulator.core.outputs.Output method) WaitingForCue (class in neural_data_simulator.tasks.center_out_reach.task_state) WaitingToBegin (class in neural_data_simulator.tasks.center_out_reach.task_state) waveform (neural_data_simulator.core.ephys_generator.SpikeEvents attribute) (neural_data_simulator.core.ephys_generator.SpikeEvents.SpikeEvent attribute)

Waveforms (class in neural_data_simulator.core.ephys_generator) waveforms (neural_data_simulator.core.settings.EphysGeneratorSettings attribute) Waveforms.Params (class in neural_data_simulator.core.ephys_generator) width (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach.Window attribute) window (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute) window_center (neural_data_simulator.tasks.center_out_reach.task_window.TaskWindow property) with_metrics (neural_data_simulator.tasks.center_out_reach.settings.CenterOutReach attribute)